The source-code version of MMMx runs under Matlab 2019b or later and requires the Matlab Oprimization, Global Optimization, Parallel Computing, and Statistics and Machine Learning toolboxes. Please use the executable version if you do not have a license for this software.
For certain functionality, MMMx relies on third-party software, such as SCWRL4, ATSAS, MUSCLE, MSMS, DSSP, HYDROPRO, or YASARA. Except for YASARA structure, which we use for structure refinement, this software is freely available for academic purposes, but may require registration and a license agreement.
The main MMMx directory and all its subdirectories must be on the Matlab path. Likewise, the directories of all required third-party software, often including subdirectories, must be on the Matlab path.
MMMx help or
MMMx docs to access the documentation.
MMMx demo_distributions.mcx to run a first example. Examples exist for all modules.
MMMx to open a file browser. You can select any MMMx control file (.mcx) to run a modeling pipeline.
For programmatic access from within Matlab, refer to the programmer’s documentation.